PHP code example of amelaye / biophp

1. Go to this page and download the library: Download amelaye/biophp library. Choose the download type require.

2. Extract the ZIP file and open the index.php.

3. Add this code to the index.php.

    
        
<?php
require_once('vendor/autoload.php');

/* Start to develop here. Best regards https://php-download.com/ */

amelaye / biophp example snippets



Amelaye\BioPHP\Domain\Sequence\Service\SequenceManager;
use Doctrine\Common\Annotations\AnnotationRegistry;
AnnotationRegistry::registerLoader('class_exists');

$client = new GuzzleHttp\Client([
    'base_uri' => 'http://api.amelayes-biophp.net'
]);
$serializer = JMS\Serializer\SerializerBuilder::create()
    ->build();

$aminoApiManager  = new \Amelaye\BioPHP\Api\AminoApi($client, $serializer);
$nucleotidManager = new \Amelaye\BioPHP\Api\NucleotidApi($client, $serializer);
$elementManager   = new \Amelaye\BioPHP\Api\ElementApi($client, $serializer);
$sequenceManager  = new SequenceManager($aminoApiManager, $nucleotidManager, $elementManager);

$aMirrors = $sequenceManager->findMirror("AGGGAATTAAGTAAATGGTAGTGG", 6, 8, 'E');

echo "<pre>";
var_dump($aMirrors);
echo "<pre>";