Libraries tagged by species

Tripal is a toolkit to facilitate construction of online genomic, genetic (and other biological) websites.

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Allows creation of optimized Info Flora species occurrence index files

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Plant taxonomy management : Family / Genus / Species / Subspecies / Variety

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Useful JSON file to retrieve basic informations form IUCN Red List Categories.

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An utility package to retrieve and manipulate IUCN Categories from iucnCategories.min.json

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Omnilab GBIF: a taxon of GBIF's taxonomy (the Catalogue of Life eXtended Release since June 2026) by its key, its legacy GBIF Backbone number, its NCBI Taxonomy id or a scientific name GBIF matches - its name, authority, rank, status, IUCN Red List category, common name, publication and classification, its legacy number and NCBI id as cross-references, its parent as a related thing - a search, and the occurrences of a place and a period (by taxon, country, basis of record), each with its time and place and its taxon related, through the GBIF API, no key needed.

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HTML form building and handling.

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Common generic boilerplate code.

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App skeleton project.

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Yet another Simple Application Framework.

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Omnilab: one contract for the public science-data APIs - entities (a compound, a gene, a protein, a species, a star, an earthquake) with their properties, units and cross-references, series (a variable measured at a place over time: weather, climate, air) and catalogued products (a satellite scene, a dataset, STAC-like) - whatever the domain; a Collector that follows cross-references from one base to the next, and a Symfony bundle.

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Omnilab WoRMS: a taxon of the World Register of Marine Species by its AphiaID, its name, or the ITIS TSN, NCBI taxon or IUCN id WoRMS knows it by - accepted name and status, classification, synonyms, vernacular names, habitat flags, the citation WoRMS asks for, its ITIS, NCBI and IUCN ids as cross-references - and a search of names, through the WoRMS REST service, no key needed.

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Omnilab STRING: a protein by its STRING id (9606.ENSP00000269305), UniProt accession, Ensembl protein or name - its preferred name, protein name, annotation, species and Ensembl protein - its interaction partners as related things with their combined scores, the network among proteins with each evidence channel's score, and their functional enrichment (GO, KEGG, Reactome, Pfam, InterPro, diseases), through STRING's API, no key needed.

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Omnilab Reactome: a pathway or a reaction by its stable identifier (R-HSA-70171) - its names, species, summary, compartments, GO biological process, Rhea reaction, inputs, outputs and catalysts, review status, release dates, DOI and diagram - its participants (UniProt proteins, ChEBI small molecules), organism, sub-events and orthologous events as related things, a search by text, and the pathways of a protein or a molecule (UniProt, ChEBI), through Reactome's Content Service, no key needed.

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Omnilab OBIS: a marine taxon of the Ocean Biodiversity Information System by its WoRMS AphiaID or its name - rank, status, classification, vernacular names, NCBI id, habitat, how many records OBIS holds - and the occurrences of a place and a period (by taxon, depth, dataset, Red List species), each with its time, place, depth, the sea surface temperature and salinity at its place, its taxon related, through the OBIS API v3, no key needed.

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