Libraries tagged by genome

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Genome PHP Library

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A module to integrate JBrowse instances into Tripal 4 pages.

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This is the Genome module for the OXID eShop.

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Tool to deploy projects and libraries on a machine

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Omnilab Ensembl: a gene, transcript, protein or exon of Ensembl by its id, or a gene by its symbol in a species - its symbol, name, biotype, species, assembly and place on the genome, a gene's NCBI Gene record and Swiss-Prot proteins and a protein's UniProt entries as cross-references, its species, gene, transcripts and protein as related things - and the genes a symbol names, through the Ensembl REST API, no key needed.

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Set of tools to setups machines

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Omnilab HGNC: a human gene by its HGNC id (HGNC:4827), approved, previous or alias symbol, or an id HGNC records (NCBI Gene, Ensembl, UniProt, OMIM) - its approved name, locus group and type, location, previous symbols and names, aliases, gene groups, status, dates, MANE Select, RefSeq and CCDS ids - its NCBI Gene, Ensembl, UniProt and OMIM ids as cross-references, and a search, through HGNC's REST service, no key needed.

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Genome merchant client libraries

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Omnilab NCBI: a gene of NCBI Gene by its GeneID - symbol, name, organism, place on the genome, summary, its UniProt and Ensembl ids - and a taxon of NCBI Taxonomy by its id or a name - scientific name, rank, lineage, common name, GBIF key - and a search of either, through NCBI Datasets v2 and E-utilities, no key needed (one for ten calls a second).

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PHP Countries and Currencies

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Extends Doctrine with native PostgreSQL support for arrays, JSONB, ranges, PostGIS geometries, text search, ltree, uuid, and 100+ PostgreSQL-specific functions.

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Geo-related tools PHP 7.3+ library

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GIS geometry library

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GeoPHP is a open-source native PHP library for doing geometry operations. It is written entirely in PHP and can therefore run on shared hosts. It can read and write a wide variety of formats: WKT (including EWKT), WKB (including EWKB), GeoJSON, KML, GPX, GeoRSS). It works with all Simple-Feature geometries (Point, LineString, Polygon, GeometryCollection etc.) and can be used to get centroids, bounding-boxes, area, and a wide variety of other useful information.

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